Protein ZmTRAF59 | |
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Information | |
Coreg Name: | ZmTRAF59 |
Species: | Maize |
Coreg Family: | TRAF |
Gene Name(Synonym): | ZmOrphan5 |
Uniprot ID: | A0A1D6PDQ1 |
Subgenome: | 2 |
ZmTRAF59 is a protein in the TRAF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Overview of domains present in v5 transcripts | |
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PF00651 | |
Zm00001eb222950_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d014165 | DAPseq | sequence | fimo | position | |
Zm00001d014165 | DAPseq | sequence | fimo | position | |
Zm00001d014165 | ChIPseq | sequence | fimo | position | |
Zm00001d014165 | PChIPseq | sequence | fimo | position |
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
Secondary Structure Color Code | |
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BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF00651 |
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PF00651 |
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Hover here to show all domains |
CTCGTCTTCTTCCGGAATCCGGACG...
CTCGTCTTCTTCCGGAATCCGGACGACGGGGCGGTACGCGCAAGACCCTACAAGAACCTCTCACTGATCGACGTGCTCCAGAGTGCCAAATTGCCAAGATTGGAAAATAGAAGATACAGAGATACAAACAGAGATTGCCCGATAAAACAGGTCCGCCGAGCCATCAGCCATGTCGTCCACCTCGGTGAGCGGCGGCGGCGGCCGGAAGAGGTCGCGATCGGCCTCCGCCATCATCGCCGACACGGCCTGCGGGCACCACATCCTCAGGATTGACGGCTATTCCCGCACCAAGGTGGTTCCAACCGGAGCGTACCTCAAGTCCCGACCTTTTACCATCGGCGGTCACCGCTGGCACATCGACTATCACCCCAACGGCCACGACCCCGACACCAAAGACTACATCTCCCTCTTCCTCGTCCTCGAGGAGCCCGCCTCCGGCTCAACAGCGAAGGGGGTGAAGGCTCAGCAGCGTTTTCGTTTCGTCGGTGAGGTGCCGGAAGAGGAGGAGCTGCCGGCGGTGTTGTTAGCGGCGGAGGAGGTGAGCAACTATGGGAGCCACCGTGGATGGGGGGATGCGAGGTTCGTCAGGAGGGAGGATTTTGAGAAGTCAGAGCACCTAAAGAACGATTCTTTCGCCGTCCGGTGTGACATCGTCGTCGCAATCAACGAGTTCCGCGGCGAGGACGAGACGGCCGCCTTCGTGTCCGTGCCTCCGCCCGACCTACACCGACACCTCGGCGAACTCCTGCAGACCGGGCAGGGCGCCGATGTGGTGTTTGAGGCCGGCGGTGAGACATTCCCCGCGCATAGGTGCGTGCTCGCGGCTCGGTCGCCGGTCTTCGCTGCAGAGTTCTTTGGCGCGATGGAGGAGAGTAAAAGCGGCAGTGCGGTCCACATTCACGACATGGAGGCTCGGGTCTTCAAGGCTTTGCTTCATTTCACATATACTGACTTGTTTTGGAAAACGAATGAAGTTGAAGAGGAAGAGGAAGACGATGTCATGGCTCAGCACCTGCTTGTTGCAGCAGACAGGTATAACTTGCCAAGATTGAAGCTCATATGTGAAGATAAATTATGCAAGTACATTAATGTGGGAACGGTGGCAACCATATTGGCACTAGCCGAGCAGCACCATTGCCATGGATTGAAGAAGGCATGCTTTCGTTTCCTTAGCTCCCCGGAGAATTTGAAGGTAGCCGTGGCAAGTGAAAGCTTCGATCATTTGAGCAAGAATTGCCCCTCTGTTATGAAGGAGTTGGTTGCCATGCTCGGCACCTTACTTGAGTAAGGCTGGGTTTTGTGTGTTCTTGTGTTGGTGTGTGCTAATGTGATGTGATGAATCAAATGCTCCTTATTTTGTCTGGGTTTCTGCTACCTGGTTTCTGTATGTGTTGTTTGATACGGATGAATCCAGGTATTCAAATCAAGAAAACTCTGTTCAGTTTGCACTTTCAGTATTTCCG
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
GATACAAACAGAGATTGCCCGATAA...
GATACAAACAGAGATTGCCCGATAAAACAGGTCCGCCGAGCCATCAGCCATGTCGTCCACCTCGGTGAGCGGCGGCGGCGGCCGGAAGAGGTCGCGATCGGCCTCCGCCATCATCGCCGACACGGCCTGCGGGCACCACATCCTCAGGATTGACGGCTATTCCCGCACCAAGGTGGTTCCAACCGGAGCGTACCTCAAGTCCCGACCTTTTACCATCGGCGGTCACCGCTGGCACATCGACTATCACCCCAACGGCCACGACCCCGACACCAAAGACTACATCTCCCTCTTCCTCGTCCTCGAGGAGCCCGCCTCCGGCTCAACAGCGAAGGGGGTGAAGGCTCAGCAGCGTTTTCGTTTCGTCGGTGAGGTGCCGGAAGAGGAGGAGCTGCCGGCGGTGTTGTTAGCGGCGGAGGAGGTGAGCAACTATGGGAGCCACCGTGGATGGGGGGATGCGAGGTTCGTCAGGAGGGAGGATTTTGAGAAGTCAGAGCACCTAAAGAACGATTCTTTCGCCGTCCGGTGTGACATCGTCGTCGCAATCAACGAGTTCCGCGGCGAGGACGAGACGGCCGCCTTCGTGTCCGTGCCTCCGCCCGACCTACACCGACACCTCGGCGAACTCCTGCAGACCGGGCAGGGCGCCGATGTGGTGTTTGAGGCCGGCGGTGAGACATTCCCCGCGCATAGGTGCGTGCTCGCGGCTCGGTCGCCGGTCTTCGCTGCAGAGTTCTTTGGCGCGATGGAGGAGAGTAAAAGCGGCAGTGCGGTCCACATTCACGACATGGAGGCTCGGGTCTTCAAGGCTTTGCTTCATTTCACATATACTGACTTGTTTTGGAAAACGAATGAAGTTGAAGAGGAAGAGGAAGACGATGTCATGGCTCAGCACCTGCTTGTTGCAGCAGACAGGTATAACTTGCCAAGATTGAAGCTCATATGTGAAGATAAATTATGCAAGTACATTAATGTGGGAACGGTGGCAACCATATTGGCACTAGCCGAGCAGCACCATTGCCATGGATTGAAGAAGGCATGCTTTCGTTTCCTTAGCTCCCCGGAGAATTTGAAGGTAGCCGTGGCAAGTGAAAGCTTCGATCATTTGAGCAAGAATTGCCCCTCTGTTATGAAGGAGTTGGTTGCCATGCTCGGCACCTTACTTGAGTAAGGCTGGGTTTTGTGTGTTCTTGTGTTGGTGTGTGCTAATGTGATGTGATGAATCAAATGCTCCTTATTTTGTCTGGGTTTCTGCTACCTGGTTTCTGTATGTGTTGTTTGATACGGATGAATCCAGGTATTCAAATCAAGAAAACTCTGTTCAGTTTGCACTTTCAGTATTTCCGGAACTGACTACCAAATATTGGTTGGAGTGAGCATGTTTTTTTTTGACAAACGCACTAACAGTCCTCGAATTT
MSSTSVSGGGGRKRSRSASAIIADTACGHHILRIDGYSRTKVVPTGAYLKSRPFTIGGHRWHIDYHPNGHDPDTKDYISL
FLVLEEPASGSTAKGVKAQQRFRFVGEVPEEEELPAVLLAAEEVSNYGSHRGWGDARFVRREDFEKSEHLKNDSFAVRCD
IVVAINEFRGEDETAAFVSVPPPDLHRHLGELLQTGQGADVVFEAGGETFPAHRCVLAARSPVFAAEFFGAMEESKSGSA
VHIHDMEARVFKALLHFTYTDLFWKTNEVEEEEEDDVMAQHLLVAADRYNLPRLKLICEDKLCKYINVGTVATILALAEQ
HHCHGLKKACFRFLSSPENLKVAVASESFDHLSKNCPSVMKELVAMLGTLLE
ATGTCGTCCACCTCGGTGAGCGGCG...
ATGTCGTCCACCTCGGTGAGCGGCGGCGGCGGCCGGAAGAGGTCGCGATCGGCCTCCGCCATCATCGCCGACACGGCCTGCGGGCACCACATCCTCAGGATTGACGGCTATTCCCGCACCAAGGTGGTTCCAACCGGAGCGTACCTCAAGTCCCGACCTTTTACCATCGGCGGTCACCGCTGGCACATCGACTATCACCCCAACGGCCACGACCCCGACACCAAAGACTACATCTCCCTCTTCCTCGTCCTCGAGGAGCCCGCCTCCGGCTCAACAGCGAAGGGGGTGAAGGCTCAGCAGCGTTTTCGTTTCGTCGGTGAGGTGCCGGAAGAGGAGGAGCTGCCGGCGGTGTTGTTAGCGGCGGAGGAGGTGAGCAACTATGGGAGCCACCGTGGATGGGGGGATGCGAGGTTCGTCAGGAGGGAGGATTTTGAGAAGTCAGAGCACCTAAAGAACGATTCTTTCGCCGTCCGGTGTGACATCGTCGTCGCAATCAACGAGTTCCGCGGCGAGGACGAGACGGCCGCCTTCGTGTCCGTGCCTCCGCCCGACCTACACCGACACCTCGGCGAACTCCTGCAGACCGGGCAGGGCGCCGATGTGGTGTTTGAGGCCGGCGGTGAGACATTCCCCGCGCATAGGTGCGTGCTCGCGGCTCGGTCGCCGGTCTTCGCTGCAGAGTTCTTTGGCGCGATGGAGGAGAGTAAAAGCGGCAGTGCGGTCCACATTCACGACATGGAGGCTCGGGTCTTCAAGGCTTTGCTTCATTTCACATATACTGACTTGTTTTGGAAAACGAATGAAGTTGAAGAGGAAGAGGAAGACGATGTCATGGCTCAGCACCTGCTTGTTGCAGCAGACAGGTATAACTTGCCAAGATTGAAGCTCATATGTGAAGATAAATTATGCAAGTACATTAATGTGGGAACGGTGGCAACCATATTGGCACTAGCCGAGCAGCACCATTGCCATGGATTGAAGAAGGCATGCTTTCGTTTCCTTAGCTCCCCGGAGAATTTGAAGGTAGCCGTGGCAAGTGAAAGCTTCGATCATTTGAGCAAGAATTGCCCCTCTGTTATGAAGGAGTTGGTTGCCATGCTCGGCACCTTACTTGAGTAA
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